Package: DCODE 1.0
DCODE: List Linear n-Peptide Constraints for Overlapping Protein Regions
Traversal graph algorithm for listing linear n-peptide constraints for overlapping protein regions. (Lebre and Gascuel, The combinatorics of overlapping genes, freely available from arXiv at : http://arxiv.org/abs/1602.04971).
Authors:
DCODE_1.0.tar.gz
DCODE_1.0.zip(r-4.5)DCODE_1.0.zip(r-4.4)DCODE_1.0.zip(r-4.3)
DCODE_1.0.tgz(r-4.4-any)DCODE_1.0.tgz(r-4.3-any)
DCODE_1.0.tar.gz(r-4.5-noble)DCODE_1.0.tar.gz(r-4.4-noble)
DCODE_1.0.tgz(r-4.4-emscripten)DCODE_1.0.tgz(r-4.3-emscripten)
DCODE.pdf |DCODE.html✨
DCODE/json (API)
| # Install 'DCODE' in R: |
| install.packages('DCODE', repos = c('https://sophie-lebre.r-universe.dev', 'https://cloud.r-project.org')) |
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 9 years agofrom:0a53b7b9da. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 16 2024 |
| R-4.5-win | OK | Sep 16 2024 |
| R-4.5-linux | OK | Sep 16 2024 |
| R-4.4-win | OK | Sep 16 2024 |
| R-4.4-mac | OK | Sep 16 2024 |
| R-4.3-win | OK | Sep 16 2024 |
| R-4.3-mac | OK | Sep 16 2024 |
Exports:build_datacompRevdeleteStopsgetAllSeqsgetConstraintgetConstraint_rec1getConstraint_rec2posLecturef1posLecturef2printConstrainttoPep
Dependencies:ade4latticeMASSnlmepixmapRcppRcppArmadillosegmentedseqinrsp
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| List Linear n-Peptide Constraints for Overlapping Protein Regions | DCODE-package DCODE |
| Function to build the elements 'aaList', 'geneticCode', 'peptideList', used by function 'getConstraint'. | build_data |
| Internal DCODE Functions | compRev deleteStops getAllSeqs getConstraint_rec1 getConstraint_rec2 pepList posLecturef1 posLecturef2 printConstraint stopCodons toPep |
| Function giving the linear constraint associated with the chosen peptide and overlapping frame. | getConstraint |
